Batch Download

Upload a file of gene or protein identifiers separated by new line characters and/or any common delimiter.

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Interactome Downloads

v 1.0

From here you can browse available interactome network downloads. Create a custom download by using the batch function above.

OrganismAvailable
Formats
SizeDescription
H. sapiens 11,470 Entries Full structurally resolved interactome network with domain amino acid locations.
A. thaliana 825 Entries Full structurally resolved interactome network with domain amino acid locations.
C. elegans 162 Entries Full structurally resolved interactome network with domain amino acid locations.
D. melanogaster 191 Entries Full structurally resolved interactome network with domain amino acid locations.
M. musculus 169 Entries Full structurally resolved interactome network with domain amino acid locations.
S. cerevisiae 1,857 Entries Full structurally resolved interactome network with domain amino acid locations.
S. pombe 52 Entries Full structurally resolved interactome network with domain amino acid locations.

Supplementary Downloads

FileAvailable
Formats
Description
PDB Amino Acid Mappings Protein amino acid index mappings from Uniprot to PDB. For each row, the offset given is the number of amino acids offset between the two indexing conventions. i.e. Index in Uniprot - offset = Index in PDB.
Domain-Domain Interactions from Co-Crystals Domain-domain interactions shown to occur in specific protein-protein pairs within co-crystal structures. These annotations are combined from 3did and iPfam.